Scientific Compute for 2-Photon Imaging

Published:

Van Hooser Lab, Brandeis University (advisor: Stephen D. Van Hooser). Research software for 2-photon calcium imaging, plus an honors thesis on functional decoding in visual cortex.

Highlights

  • Memory-mapped binaries from terabytes of raw fluorescence.
  • 50+ feature-extraction scripts; about 40% faster processing.
  • CI for open-source tools (vhlab-toolbox, NDI-matlab).
  • Honors thesis on neural tuning dynamics; manuscript in preparation.

See the Research page for the thesis and advisor.